PoplarV1, Main, Exploration, bibRecord, 001497

Caldicellulosiruptor saccharolyticus transcriptomes reveal consequences of chemical pretreatment and genetic modification of lignocellulose.

Identifieur interne : 001497 ( Main/Exploration ); précédent : 001496; suivant : 001498

Caldicellulosiruptor saccharolyticus transcriptomes reveal consequences of chemical pretreatment and genetic modification of lignocellulose.

Auteurs : Sara E. Blumer-Schuette [États-Unis] ; Jeffrey V. Zurawski [États-Unis] ; Jonathan M. Conway [États-Unis] ; Piyum Khatibi [États-Unis] ; Derrick L. Lewis [États-Unis] ; Quanzi Li [États-Unis] ; Vincent L. Chiang [États-Unis] ; Robert M. Kelly [États-Unis]

Source :

Microbial biotechnology [ 1751-7915 ] ; 2017.

RBID : pubmed:28322023

Descripteurs français

KwdFr :
- Acides (composition chimique), Biotransformation (MeSH), Firmicutes (génétique), Firmicutes (métabolisme), Lignine (métabolisme), Populus (composition chimique), Populus (génétique), Populus (microbiologie), Populus (métabolisme), Protéines bactériennes (génétique), Protéines bactériennes (métabolisme), Transcriptome (MeSH).
MESH :
- composition chimique : Acides, Populus.
- génétique : Firmicutes, Populus, Protéines bactériennes.
- microbiologie : Populus.
- métabolisme : Firmicutes, Lignine, Populus, Protéines bactériennes.
- Biotransformation, Transcriptome.

English descriptors

KwdEn :
- Acids (chemistry), Bacterial Proteins (genetics), Bacterial Proteins (metabolism), Biotransformation (MeSH), Firmicutes (genetics), Firmicutes (metabolism), Lignin (metabolism), Populus (chemistry), Populus (genetics), Populus (metabolism), Populus (microbiology), Transcriptome (MeSH).
MESH :
- chemical , chemistry : Acids.
- chemical , genetics : Bacterial Proteins.
- chemical , metabolism : Bacterial Proteins, Lignin.
- chemistry : Populus.
- genetics : Firmicutes, Populus.
- metabolism : Firmicutes, Populus.
- microbiology : Populus.
- Biotransformation, Transcriptome.

Abstract

Recalcitrance of plant biomass is a major barrier for commercially feasible cellulosic biofuel production. Chemical and enzymatic assays have been developed to measure recalcitrance and carbohydrate composition; however, none of these assays can directly report which polysaccharides a candidate microbe will sense during growth on these substrates. Here, we propose using the transcriptomic response of the plant biomass-deconstructing microbe, Caldicellulosiruptor saccharolyticus, as a direct measure of how suitable a sample of plant biomass may be for fermentation based on the bioavailability of polysaccharides. Key genes were identified using the global gene response of the microbe to model plant polysaccharides and various types of unpretreated, chemically pretreated and genetically modified plant biomass. While the majority of C. saccharolyticus genes responding were similar between plant biomasses; subtle differences were discernable, most importantly between chemically pretreated or genetically modified biomass that both exhibit similar levels of solubilization by the microbe. Furthermore, the results here present a new paradigm for assessing plant-microbe interactions that can be deployed as a biological assay to report on the complexity and recalcitrance of plant biomass.

DOI: 10.1111/1751-7915.12494
PubMed: 28322023
PubMed Central: PMC5658599

Affiliations:

États-Unis

Links toward previous steps (curation, corpus...)

to stream Main, to step Corpus: 001402
to stream Main, to step Curation: 001402

Le document en format XML

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<front><div type="abstract" xml:lang="en">Recalcitrance of plant biomass is a major barrier for commercially feasible cellulosic biofuel production. Chemical and enzymatic assays have been developed to measure recalcitrance and carbohydrate composition; however, none of these assays can directly report which polysaccharides a candidate microbe will sense during growth on these substrates. Here, we propose using the transcriptomic response of the plant biomass-deconstructing microbe, Caldicellulosiruptor saccharolyticus, as a direct measure of how suitable a sample of plant biomass may be for fermentation based on the bioavailability of polysaccharides. Key genes were identified using the global gene response of the microbe to model plant polysaccharides and various types of unpretreated, chemically pretreated and genetically modified plant biomass. While the majority of C. saccharolyticus genes responding were similar between plant biomasses; subtle differences were discernable, most importantly between chemically pretreated or genetically modified biomass that both exhibit similar levels of solubilization by the microbe. Furthermore, the results here present a new paradigm for assessing plant-microbe interactions that can be deployed as a biological assay to report on the complexity and recalcitrance of plant biomass.</div>
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<Abstract><AbstractText>Recalcitrance of plant biomass is a major barrier for commercially feasible cellulosic biofuel production. Chemical and enzymatic assays have been developed to measure recalcitrance and carbohydrate composition; however, none of these assays can directly report which polysaccharides a candidate microbe will sense during growth on these substrates. Here, we propose using the transcriptomic response of the plant biomass-deconstructing microbe, Caldicellulosiruptor saccharolyticus, as a direct measure of how suitable a sample of plant biomass may be for fermentation based on the bioavailability of polysaccharides. Key genes were identified using the global gene response of the microbe to model plant polysaccharides and various types of unpretreated, chemically pretreated and genetically modified plant biomass. While the majority of C. saccharolyticus genes responding were similar between plant biomasses; subtle differences were discernable, most importantly between chemically pretreated or genetically modified biomass that both exhibit similar levels of solubilization by the microbe. Furthermore, the results here present a new paradigm for assessing plant-microbe interactions that can be deployed as a biological assay to report on the complexity and recalcitrance of plant biomass.</AbstractText>
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Caldicellulosiruptor saccharolyticus transcriptomes reveal consequences of chemical pretreatment and genetic modification of lignocellulose.

Caldicellulosiruptor saccharolyticus transcriptomes reveal consequences of chemical pretreatment and genetic modification of lignocellulose.

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